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Volume 35
Main Index

Issue 01


Identifying Hydrogen Bond Alignments in Multistranded DNA Architectures by NMR
Ananya Majumdar and Dinshaw J. Patel
pp 1–11 DOI: 10.1021/ar010097+
Solvolysis of Vinyl Iodonium Salts. New Insights into Vinyl Cation Intermediates
Tadashi Okuyama
pp 12–18 DOI: 10.1021/ar0100374
Excited-State Proton Transfer:  From Constrained Systems to “Super” Photoacids to Superfast Proton Transfer
Laren M. Tolbert and Kyril M. Solntsev
pp 19–27 DOI: 10.1021/ar990109f
Is There Stereoelectronic Control in Formation and Cleavage of Tetrahedral Intermediates?
Charles L. Perrin
pp 28–34 DOI: 10.1021/ar970169q
New Functionalization of Myoglobin by Chemical Modification of Heme-Propionates
Takashi Hayashi and Yoshio Hisaeda
pp 35–43 DOI: 10.1021/ar000087t
Formation, Reactivity, and Properties of Nondative Late Transition Metal−Oxygen and −Nitrogen Bonds
J. Robin Fulton, Andrew W. Holland, Daniel J. Fox, and Robert G. Bergman
pp 44–56 DOI: 10.1021/ar000132x
Probing Electronic Communication in Covalently Linked Multiporphyrin Arrays. A Guide to the Rational Design of Molecular Photonic Devices
Dewey Holten, David F. Bocian, and Jonathan S. Lindsey
pp 57–69 DOI: 10.1021/ar970264z

Issue 02


Development of Experimental and Theoretical Crystal Lattice Organic Photochemistry:  The Quantitative Cavity. Mechanistic and Exploratory Organic Photochemistry1
Howard E. Zimmerman and Evgueni E. Nesterov
pp 77–85 DOI: 10.1021/ar000210g
Recognition in the Minor Groove of Double-Stranded DNA by Microgonotropens
Alexander L. Satz and Thomas C. Bruice
pp 86–95 DOI: 10.1021/ar0101032
Theoretical Investigation of the Mechanism of Cis−Trans Regulation for the Allylnickel(II)-Catalyzed 1,4 Polymerization of Butadiene
Sven Tobisch
pp 96–104 DOI: 10.1021/ar010001b
Isotope Effects in the Study of Phosphoryl and Sulfuryl Transfer Reactions
Alvan C. Hengge
pp 105–112 DOI: 10.1021/ar000143q
Chemical and Catalytic Mechanisms of Carboxyl Transfer Reactions in Biotin-Dependent Enzymes
Paul V. Attwood and John C. Wallace
pp 113–120 DOI: 10.1021/ar000049+
Molecular Engineering of Semiconductor Surfaces and Devices
Gonen Ashkenasy, David Cahen, Rami Cohen, Abraham Shanzer, and Ayelet Vilan
pp 121–128 DOI: 10.1021/ar990047t
Kinetics of Chemical Reactions on Solid Surfaces:  Deviations from Conventional Theory
Francisco Zaera
pp 129–136 DOI: 10.1021/ar000193v
Formation, Reactivity, and Properties of Nondative Late Transition Metal−Oxygen and −Nitrogen Bonds
J. Robin Fulton, Andrew W. Holland, Daniel J. Fox, and Robert G. Bergman
pp 137–137 DOI: 10.1021/ar020005w

Issue 03


A View at the Millennium:  the Efficiency of Enzymatic Catalysis
Thomas C. Bruice
pp 139–148 DOI: 10.1021/ar0001665
Micropattern Formation in Supported Lipid Membranes
Jay T. Groves and Steven G. Boxer
pp 149–157 DOI: 10.1021/ar950039m
Thermodynamics of DNA Interactions from Single Molecule Stretching Experiments
Mark C. Williams, Ioulia Rouzina, and Victor A. Bloomfield
pp 159–166 DOI: 10.1021/ar010045k
From Mechanistic Studies on Artemisinin Derivatives to New Modular Antimalarial Drugs
Anne Robert, Odile Dechy-Cabaret, Jérôme Cazelles, and Bernard Meunier
pp 167–174 DOI: 10.1021/ar990164o
The Propargylic Route as a Short and Versatile Entry to Optically Active Monofluorinated Compounds
Michaël Prakesch, Danielle Grée, and René Grée
pp 175–181 DOI: 10.1021/ar010055l
The Crystal Structure of Catechol Oxidase:  New Insight into the Function of Type-3 Copper Proteins
Carsten Gerdemann, Christoph Eicken, and Bernt Krebs
pp 183–191 DOI: 10.1021/ar990019a
Quantum Theory of Dissociative Chemisorption on Metal Surfaces
Geert-Jan Kroes, Axel Gross, Evert-Jan Baerends, Matthias Scheffler, and Drew A. McCormack
pp 193–200 DOI: 10.1021/ar010104u

Issue 04


Role of Cofactors in Protein Folding
Pernilla Wittung-Stafshede
pp 201–208 DOI: 10.1021/ar010106e
Development of Novel Lewis Acid Catalysts for Selective Organic Reactions in Aqueous Media
ShŪ Kobayashi and Kei Manabe
pp 209–217 DOI: 10.1021/ar000145a
Carbon−Carbon Bond Formation Involving Reactions of Alkynes with Group 9 Metals (Ir, Rh, Co):  Preparation of Conjugated Olefins
Chong Shik Chin, Gyongshik Won, Daesung Chong, Mieock Kim, and Hyungeui Lee
pp 218–225 DOI: 10.1021/ar000090c
Heteroatom-Directed Aromatic Lithiation:  A Versatile Route to the Synthesis of Organochalcogen (Se, Te) Compounds
Govindasamy Mugesh and Harkesh B. Singh
pp 226–236 DOI: 10.1021/ar010091k
Understanding Nature's Strategies for Enzyme-Catalyzed Racemization and Epimerization
Martin E. Tanner
pp 237–246 DOI: 10.1021/ar000056y
Intermolecular Electron Transfer Reactivity Determined from Cross-Rate Studies
Stephen F. Nelsen and Jack R. Pladziewicz
pp 247–254 DOI: 10.1021/ar0101077

Issue 05


How Might Qinghaosu (Artemisinin) and Related Compounds Kill the Intraerythrocytic Malaria Parasite? A Chemist's View
Yikang Wu
pp 255–259 DOI: 10.1021/ar000080b
From Knowledge-Based Potentials to Combinatorial Lead Design in Silico
Bartosz A. Grzybowski, Alexey V. Ishchenko, Jun Shimada, and Eugene I. Shakhnovich
pp 261–269 DOI: 10.1021/ar970146b
On the Origins of Diastereofacial Selectivity of [4 + 2] Cycloadditions in Cage- Annulated and Polycarbocyclic Diene/Dienophile Systems
Alan P. Marchand, James M. Coxon
pp 271–277 DOI: 10.1021/ar010095p
Thermal [1,3] Carbon Sigmatropic Rearrangements of Vinylcyclobutanes
Phyllis A. Leber and John E. Baldwin
pp 279–287 DOI: 10.1021/ar010100p
Molecular Quantum Similarity and the Fundamentals of QSAR
Emili Besalú, Xavier Gironés, Lluís Amat, and Ramon Carbó-Dorca
pp 289–295 DOI: 10.1021/ar010048x
Photochemical Nucleophile−Olefin Combination, Aromatic Substitution Reaction. Its Synthetic Development and Mechanistic Exploration
Dino Mangion and Donald R. Arnold
pp 297–304 DOI: 10.1021/ar010108z
Mass Spectrometric Contributions to Problems Related to the Chemistry of Atmospheres
Giulia de Petris
pp 305–312 DOI: 10.1021/ar010044s
Radicals, Radical Pairs and Triplet States in Photosynthesis
Wolfgang Lubitz, Friedhelm Lendzian, and Robert Bittl
pp 313–320 DOI: 10.1021/ar000084g

Issue 06


Molecular Dynamics Simulations of Biomolecules
Martin Karplus
pp 321–323 DOI: 10.1021/ar020082r
Molecular Dynamics and NMR Spin Relaxation in Proteins
David A. Case
pp 325–331 DOI: 10.1021/ar010020l
Molecular Dynamics of Acetylcholinesterase
Tongye Shen, Kaihsu Tai, Richard H. Henchman, and J. Andrew McCammon
pp 332–340 DOI: 10.1021/ar010025i
The Incorporation of Quantum Effects in Enzyme Kinetics Modeling
Donald G. Truhlar, Jiali Gao, Cristobal Alhambra, Mireia Garcia-Viloca, José Corchado, Maria Luz Sánchez, and Jordi Villà
pp 341–349 DOI: 10.1021/ar0100226
Simulations of Nucleic Acids and Their Complexes
Emmanuel Giudice and Richard Lavery
pp 350–357 DOI: 10.1021/ar010023y
Ligand Binding Affinities from MD Simulations
Johan Åqvist, Victor B. Luzhkov, and Bjørn O. Brandsdal
pp 358–365 DOI: 10.1021/ar010014p
Computational Studies of the Gramicidin Channel
BenoÎt Roux
pp 366–375 DOI: 10.1021/ar010028v
Solvation and Hydration of Proteins and Nucleic Acids:  A Theoretical View of Simulation and Experiment
Vladimir Makarov and B. Montgomery Pettitt, Michael Feig
pp 376–384 DOI: 10.1021/ar0100273
Molecular Dynamics Simulations of Biological Reactions
Arieh Warshel
pp 385–395 DOI: 10.1021/ar010033z
Long Time Dynamics of Complex Systems
Ron Elber, Avijit Ghosh, and Alfredo Cárdenas
pp 396–403 DOI: 10.1021/ar010021d
Molecular Dynamics Applied to X-ray Structure Refinement
Axel T. Brunger and Paul D. Adams
pp 404–412 DOI: 10.1021/ar010034r
Evolution and Physics in Comparative Protein Structure Modeling
András Fiser, Michael Feig, Charles L. Brooks, III, and Andrej Sali
pp 413–421 DOI: 10.1021/ar010061h
Molecular Dynamics Simulations of the Protein Unfolding/Folding Reaction
Valerie Daggett
pp 422–429 DOI: 10.1021/ar0100834
Free Energy Simulations Come of Age:  Protein−Ligand Recognition
Thomas Simonson, Georgios Archontis, and Martin Karplus
pp 430–437 DOI: 10.1021/ar010030m
Lipid Bilayers, NMR Relaxation, and Computer Simulations
Richard W. Pastor and Richard M. Venable, Scott E. Feller
pp 438–446 DOI: 10.1021/ar0100529
Protein and Peptide Folding Explored with Molecular Simulations
Charles L. Brooks III
pp 447–454 DOI: 10.1021/ar0100172
The Role and Perspective of Ab Initio Molecular Dynamics in the Study of Biological Systems
Paolo Carloni, Ursula Rothlisberger, and Michele Parrinello
pp 455–464 DOI: 10.1021/ar010018u
Molecular Dynamics Applied to Nucleic Acids
Jan Norberg and Lennart Nilsson
pp 465–472 DOI: 10.1021/ar010026a
Long Time Dynamic Simulations:  Exploring the Folding Pathways of an Alzheimer's Amyloid Aβ-Peptide
John E. Straub, Javier Guevara, Shuanghong Huo, and Jonathan P. Lee
pp 473–481 DOI: 10.1021/ar010031e
Computer Simulation Studies of Model Biological Membranes
Leonor Saiz and Michael L. Klein
pp 482–489 DOI: 10.1021/ar010167c

Issue 07


Poly(dimethylsiloxane) as a Material for Fabricating Microfluidic Devices
J. Cooper McDonald and George M. Whitesides
pp 491–499 DOI: 10.1021/ar010110q
Taming Reactive Phenol Tautomers and o-Quinone Methides with Transition Metals:  A Structure−Reactivity Relationship
Hani Amouri and Jean Le Bras
pp 501–510 DOI: 10.1021/ar010105m
Crystal Engineering of NLO Materials Based on Metal−Organic Coordination Networks
Owen R. Evans and Wenbin Lin
pp 511–522 DOI: 10.1021/ar0001012
Proton Transfer from Alkane Radical Cations to Alkane Molecules:  Selectivity with Respect to the Site of Proton Donation and Proton Acceptance
Jan Ceulemans
pp 523–531 DOI: 10.1021/ar0100430
Quasi-Nature Catalysis:  Developing C−C Bond Formations Catalyzed by Late Transition Metals in Air and Water
Chao-Jun Li
pp 533–538 DOI: 10.1021/ar0100125
Polymeric Materials Containing Bile Acids
Xiao-Xia Zhu and Marieta Nichifor
pp 539–546 DOI: 10.1021/ar0101180
Adhesion, Friction, and Mechanical Properties of Functionalized Alkanethiol Self-Assembled Monolayers
Jack E. Houston and Hyun I. Kim
pp 547–553 DOI: 10.1021/ar9801144
Molecular Design of Transition Metal Alkynyl Complexes as Building Blocks for Luminescent Metal-Based Materials: Structural and Photophysical Aspects
Vivian Wing-Wah Yam
pp 555–563 DOI: 10.1021/ar0000758
Hydrogen Bridges in Crystal Engineering:  Interactions without Borders
Gautam R. Desiraju
pp 565–573 DOI: 10.1021/ar010054t
Tripodal Amido Complexes:  Molecular “Claws” in Main Group and Transition Metal Chemistry
Lutz H. Gade
pp 575–582 DOI: 10.1021/ar010116f

Issue 08


Archaeological Chemistry
Joseph B. Lambert
pp 583–584 DOI: 10.1021/ar020159b
The Beginnings of Vitreous Materials in the Near East and Egypt
Michael Tite, Andrew Shortland, and Sarah Paynter
pp 585–593 DOI: 10.1021/ar000204k
Tradition and Experiment in First Millennium A.D. Glass ProductionThe Emergence of Early Islamic Glass Technology in Late Antiquity
Julian Henderson
pp 594–602 DOI: 10.1021/ar0002020
Instrumental Neutron Activation Analysis of Archaeological Ceramics:  Scale and Interpretation
Ronald L. Bishop and M. James Blackman
pp 603–610 DOI: 10.1021/ar000199k
Obsidian Provenance Research in the Americas
Michael D. Glascock
pp 611–617 DOI: 10.1021/ar010041f
Chemical Fingerprinting and Source Tracing of Obsidian:  The Central Mediterranean Trade in Black Gold
Robert H. Tykot
pp 618–627 DOI: 10.1021/ar000208p
Amber:  the Organic Gemstone
Joseph B. Lambert and George O. Poinar, Jr.
pp 628–636 DOI: 10.1021/ar0001970
Chronometric Dating in Archaeology:  A Review
Henry P. Schwarcz
pp 637–643 DOI: 10.1021/ar010039o
Here Today, Gone Tomorrow? Integrated Experimentation and Geochemical Modeling in Studies of Archaeological Diagenetic Change
Lyn Wilson and A. Mark Pollard
pp 644–651 DOI: 10.1021/ar000203s
Detecting Past Attempts To Restore Two Important Works of Art
Giuseppe Spoto
pp 652–659 DOI: 10.1021/ar0002121
Chemistry of Archaeological Animal Fats
Richard P. Evershed, Stephanie N. Dudd, Mark S. Copley, Robert Berstan, Andrew W. Stott, Hazel Mottram, Stephen A. Buckley, and Zoe Crossman
pp 660–668 DOI: 10.1021/ar000200f
Archaeological Contributions of Skeletal Lead Analysis
Lorentz Wittmers, Jr., Arthur Aufderheide, George (Rip) Rapp, and Agnes Alich
pp 669–675 DOI: 10.1021/ar000198s
The Genetic Secrets Some Fossils Hold
Hendrik N. Poinar
pp 676–684 DOI: 10.1021/ar000207x

Issue 09


Green Chemistry
István T. Horváth
pp 685–685 DOI: 10.1021/ar020160a
Origins, Current Status, and Future Challenges of Green Chemistry
Paul T. Anastas and Mary M. Kirchhoff
pp 686–694 DOI: 10.1021/ar010065m
On Inventing Reactions for Atom Economy
Barry M. Trost
pp 695–705 DOI: 10.1021/ar010068z
The Chemistry of Dimethyl Carbonate
Pietro Tundo and Maurizio Selva
pp 706–716 DOI: 10.1021/ar010076f
Microwave-Accelerated Homogeneous Catalysis in Organic Chemistry
Mats Larhed, Christina Moberg, and Anders Hallberg
pp 717–727 DOI: 10.1021/ar010074v
Unsaturated O- and N-Heterocycles from Carbohydrate Feedstocks
Frieder W. Lichtenthaler
pp 728–737 DOI: 10.1021/ar010071i
Aqueous Biphasic Hydrogenations
Ferenc Joó
pp 738–745 DOI: 10.1021/ar0100733
Supercritical Carbon Dioxide as a Green Reaction Medium for Catalysis
Walter Leitner
pp 746–756 DOI: 10.1021/ar010070q
H2O2 in CO2:  Sustainable Production and Green Reactions
Dan Hâncu, Jordan Green, and Eric J. Beckman
pp 757–764 DOI: 10.1021/ar010069r
2-Arylindene Metallocenes:  Conformationally Dynamic Catalysts To Control the Structure and Properties of Polypropylenes
Shirley Lin and Robert M. Waymouth
pp 765–773 DOI: 10.1021/ar010081j
Green, Catalytic Oxidations of Alcohols
Roger A. Sheldon, Isabel W. C. E. Arends, Gerd-Jan ten Brink, and Arné Dijksman
pp 774–781 DOI: 10.1021/ar010075n
TAML Oxidant Activators:  A New Approach to the Activation of Hydrogen Peroxide for Environmentally Significant Problems
Terrence J. Collins
pp 782–790 DOI: 10.1021/ar010079s
Solid Acids for Green Chemistry
James H. Clark
pp 791–797 DOI: 10.1021/ar010072a
The Use of Ultra- and Nanofiltration Techniques in Homogeneous Catalyst Recycling
Harm P. Dijkstra, Gerard P. M. van Klink, and Gerard van Koten
pp 798–810 DOI: 10.1021/ar0100778
Real-Time Electrochemical Monitoring:  Toward Green Analytical Chemistry
Joseph Wang
pp 811–816 DOI: 10.1021/ar010066e

Issue 10


Characterization of Nucleic Acids by Nanopore Analysis
David W. Deamer, Daniel Branton
pp 817–825 DOI: 10.1021/ar000138m
Catalytic C−H/Olefin Coupling
Fumitoshi Kakiuchi and Shinji Murai
pp 826–834 DOI: 10.1021/ar960318p
Design and Implementation of New, Silicon-Based, Cross-Coupling Reactions:  Importance of Silicon−Oxygen Bonds
Scott E. Denmark and Ramzi F. Sweis
pp 835–846 DOI: 10.1021/ar020001r
Electrostatic Assembly of Nanoparticles and Biomacromolecules
Murali Sastry, Mala Rao, and Krishna N. Ganesh
pp 847–855 DOI: 10.1021/ar010094x
Masked o-Benzoquinones in Organic Synthesis
Chun-Chen Liao and Rama Krishna Peddinti
pp 856–866 DOI: 10.1021/ar000194n
Thermal Reactions of Dipolar Trimethylenemethane Species
Eiichi Nakamura and Shigeru Yamago
pp 867–877 DOI: 10.1021/ar0100935
Lariat Ether Receptor Systems Show Experimental Evidence for Alkali Metal Cation−π Interactions
George W. Gokel, Leonard J. Barbour, Riccardo Ferdani, and Jiaxin Hu
pp 878–886 DOI: 10.1021/ar000093p
Structural Characteristics of Intramolecular Hydrogen Bonding in Benzene Derivatives
Attila Kovács, Andrea Szabó, and István Hargittai
pp 887–894 DOI: 10.1021/ar020003b
Evolution of the Vinylogous Mannich Reaction as a Key Construction for Alkaloid Synthesis
Stephen F. Martin
pp 895–904 DOI: 10.1021/ar950230w
Synthetic and Mechanistic Studies of the Cycloisomerization and Cyclization/Hydrosilylation of Functionalized Dienes Catalyzed by Cationic Palladium(II) Complexes
Ross A. Widenhoefer
pp 905–913 DOI: 10.1021/ar010040n

Issue 11


Organometallic-like C−H Bond Activation and C−S Bond Formation on the Disulfide Bridge in the RuSSRu Core Complexes
Kazuko Matsumoto and Hiroyasu Sugiyama
pp 915–926 DOI: 10.1021/ar000103m
Structural and Morphological Control of Cationic Surfactant-Templated Mesoporous Silica
Hong-Ping Lin and Chung-Yuan Mou
pp 927–935 DOI: 10.1021/ar000074f
Replacing the Nucleobases in DNA with Designer Molecules
Eric T. Kool
pp 936–943 DOI: 10.1021/ar000183u
Classic Annulenes, Nonclassical Applications
Michael J. Marsella
pp 944–951 DOI: 10.1021/ar010090s
How To Get the Most Out of Two Phosphorus Chemistries. Studies on H-Phosphonates
Jacek Stawinski and Adam Kraszewski
pp 952–960 DOI: 10.1021/ar010049p
Inhibitors of de Novo Nucleotide Biosynthesis as Drugs
Richard I. Christopherson, Stephen D. Lyons, and Paul K. Wilson
pp 961–971 DOI: 10.1021/ar0000509
High-Symmetry Coordination Cages via Self-Assembly
S. Russell Seidel and Peter J. Stang
pp 972–983 DOI: 10.1021/ar010142d
N-tert-Butanesulfinyl Imines:  Versatile Intermediates for the Asymmetric Synthesis of Amines
Jonathan A. Ellman, Timothy D. Owens, and Tony P. Tang
pp 984–995 DOI: 10.1021/ar020066u

Issue 12


Carbon Nanotubes
Robert C. Haddon
pp 997–997 DOI: 10.1021/ar020259h
Carbon Nanotubes from Organometallic Precursors
C. N. R. Rao and A. Govindaraj
pp 998–1007 DOI: 10.1021/ar0101584
Multiwall Carbon Nanotubes:  Synthesis and Application
Rodney Andrews, David Jacques, Dali Qian, and Terry Rantell
pp 1008–1017 DOI: 10.1021/ar010151m
Fundamental Electronic Properties and Applications of Single-Walled Carbon Nanotubes
Min Ouyang, Jin-Lin Huang, and Charles M. Lieber
pp 1018–1025 DOI: 10.1021/ar0101685
Molecular Electronics with Carbon Nanotubes
Phaedon Avouris
pp 1026–1034 DOI: 10.1021/ar010152e
Carbon Nanotubes:  Synthesis, Integration, and Properties
Hongjie Dai
pp 1035–1044 DOI: 10.1021/ar0101640
Materials Science of Carbon Nanotubes:  Fabrication, Integration, and Properties of Macroscopic Structures of Carbon Nanotubes
Otto Zhou, Hideo Shimoda, Bo Gao, Soojin Oh, Les Fleming, and GuoZhen Yue
pp 1045–1053 DOI: 10.1021/ar010162f
Structural Characterization of Atomically Regulated Nanocrystals Formed within Single-Walled Carbon Nanotubes Using Electron Microscopy
Jeremy Sloan, Angus I. Kirkland, John L. Hutchison, and Malcolm L. H. Green
pp 1054–1062 DOI: 10.1021/ar010169x
Defects in Carbon Nanotubes
J.-C. Charlier
pp 1063–1069 DOI: 10.1021/ar010166k
Single Nanotube Raman Spectroscopy
M. S. Dresselhaus, G. Dresselhaus, A. Jorio, A. G. Souza Filho, M. A. Pimenta, and R. Saito
pp 1070–1078 DOI: 10.1021/ar0101537
Chemical Doping of Single-Wall Carbon Nanotubes
John E. Fischer
pp 1079–1086 DOI: 10.1021/ar0101638
Fluorination of Single-Wall Carbon Nanotubes and Subsequent Derivatization Reactions
Valery N. Khabashesku, W. Edward Billups, and John L. Margrave
pp 1087–1095 DOI: 10.1021/ar020146y
Functionalized Carbon Nanotubes:  Properties and Applications
Ya-Ping Sun, Kefu Fu, Yi Lin, and Weijie Huang
pp 1096–1104 DOI: 10.1021/ar010160v
Chemistry of Single-Walled Carbon Nanotubes
S. Niyogi, M. A. Hamon, H. Hu, B. Zhao, P. Bhowmik, R. Sen, M. E. Itkis, and R. C. Haddon
pp 1105–1113 DOI: 10.1021/ar010155r